Preprint

  1. Laloé D, Chiquet J, Jaffrézic F, Gautier M: FLPCA: A Fused Lasso PCA-based approach to identify influential markers in differentiated populations from dense SNP data
  2. Perrot M, Lévy-Leduc C, Chiquet J, Sansonnet L, Brégère M, Étienne M-P, Robin S, Genta-Gouve G, et al.: A multivariate variable selection approach for analyzing LC-MS metabolomics data arXiv preprint
    arXiv
  3. Champion M, Chiquet J, Neuvial P, Elati M, Birmelé E: Identification of deregulated transcription factors involved in subtypes of cancers submitted to BMC System Biology
  4. Tabouy T, Barbillon P, Chiquet J: Inference under Missing Data Conditions in the Stochastic Block Model arXiv preprint
    arXiv
  5. Chiquet J, Mariadassous M, Robin S: Variational inference for probabilistic Poisson PCA arXiv preprint, submitted to Annals of Applied Statistics
    arXiv code
  6. Grandvalet Y, Chiquet J, Ambroise C: Sparsity by Worst-Case Penalties arXiv preprint
    arXiv code
  7. Perrot M, Lévy-Leduc C, Sansonnet L, Chiquet J: Variable selection in multivariate linear models with high-dimensional covariance matrix estimation arXiv preprint
    arXiv

Journal papers

  1. Brault V, Chiquet J, Lévy-Leduc C: Efficient block boundaries estimation in block-wise constant matrices: An application to HiC data Electron J Statist 11: 1570–1599, 2017
    arXiv code
  2. Chiquet J, Gutierrez P, Rigaill G: Fast tree inference with weighted fusion penalties Journal of Computational and Graphical Statistics: 205–216, 2017
    arXiv url code
  3. Chiquet J, Grandvalet Y, Rigaill G: Categorical regularization: Discussion of article by Tutz and Gertheiss Statistical Modelling: 228–237, 2016
    HAL url
  4. Chiquet J, Mary-Huard T, Robin S: Structured Regularization for conditional Gaussian Graphical Models Statistics and Computing: 789–804, 2016
    arXiv url code
  5. Latouche P, Mattei P-A, Bouveyron C, Chiquet J: Combining a Relaxed EM Algorithm with Occam’s Razor for Bayesian Variable Selection in High-Dimensional Regression Journal of Multivariate Analysis: 177–190, 2016
    HAL url code
  6. Picchetti T, Chiquet J, Elati M, Neuvial P, Nicolle R, Birmelé E: A model for gene deregulation detection using expression data BMC Systems Biology, 2015
    HAL url
  7. Chaloub B, Denoeud F, Liu S, Parkin S, Tang H, X. W, Chiquet J, 76 more, et al.: Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome Science: 950–953, 2014
    url
  8. Chelaifa H, Chagué V, Chalabi S, Mestiri I, Arnaud D, Deffains D, Lu Y, Belcram H, et al.: Prevalence of gene expression additivity in genetically stable wheat allohexaploids New Phytologist 197: 730–736, 2013
    url
  9. Chiquet J, Grandvalet Y, Charbonnier C: Sparsity in sign-coherent groups of variables via the cooperative-Lasso The Annals of Applied Statistics 6: 795–830, 2012
    arXiv url slides
  10. Chiquet J, Grandvalet Y, Ambroise C: Inferring multiple graphical models Statistics and Computing 21: 537–553, 2011
    arXiv url slides code
  11. Charbonnier C, Chiquet J, Ambroise C: Weighted-Lasso for structured network inference from time course data Statistical Applications in Genomics and Molecular Biology 9, 2010
    arXiv url slides code
  12. Ambroise C, Chiquet J, Matias C: Inferring sparse Gaussian graphical models with latent structure Electronic Journal of Statistics 3: 205–238, 2009
    arXiv url slides code
  13. Chiquet J, Smith A, Grasseau G, Matias C, Ambroise C: SIMoNe: Statistical Inference for MOdular NEtworks Bioinformatics 25: 417–418, 2009
    url code
  14. Chiquet J, Limnios N, Eid M: Piecewise deterministic Markov processes applied to fatigue crack growth modelling Journal of Statistical Planning and Inference 139: 1657–1667, 2009
    url
  15. Chiquet J, Limnios N: A method to compute the transition function of a piecewise deterministic Markov process Statistics and Probability Letters 78: 1397–1403, 2008
    url
  16. Chiquet J, Limnios N, Eid M: Modelling and Estimating Stochastic Dynamical Systems with Markovian Switching Reliability Engineering and System Safety 93: 1801–1808, 2008
    url
  17. Chiquet J, Limnios N: Estimating stochastic dynamical systems driven by a continuous-time jump Markov process Methodology and Computing in Applied Probability 8: 431–447, 2006
    url

Book chapter

  1. Vacher A C. Tamaddoni-Nezhad, Kamenova S, Peyrard N, Schwaller L, Julien Chiquet J, Smith MA, Vallance J, Moalic Y, et al.: Advances in Ecological Research, in: 2016.
  2. Jeanmoungin M, Charbonnier C, Guedj M, Chiquet J: Probabilistic graphical models dedicated to applications in genetics, genomics and postgenomics, in: 2014.
    url
  3. Chiquet J, Limnios N: Stochastic Reliability and Maintenance Modeling, in: Vol 9. Springer Series in Reliability Engineering. Springer, 2013.
    url
  4. Chiquet J, Limnios N: Mathematical methods in survival analysis, reliability and quality of life, in: Wiley/ISTE, 2008.
    url

Popular science

  1. Chiquet J: Statistique et génome: réseaux biologiques La gazette des mathématiciens 130: 76–82, 2011
    url

Thesis

  1. Chiquet J: Contributions to sparse methods for complex data analysis, 2015
    url
  2. Chiquet J: Modélisation et estimation des processus de dégradation avec application en fiabilité des structures, 2007
    url
  3. Chiquet J: Estimation des températures journalières à l’aide de techniques markoviennes, 2003
    url